Co-Diversification Scan Between Hosts and Symbionts

Co-Diversification Scan Between Hosts and Symbionts

Usage

codiv(
  Host_tree,
  Symbiont_tree,
  Host_to_Symbiont_df,
  min_hosts = 3,
  min_symbiont_tips = 7,
  span_fraction = 0.1,
  permutations = 99,
  seed = 8675309,
  verbose = TRUE,
  Save_fp,
  methods = c("hommola", "paco", "parafit"),
  focus_hosts,
  subtree_features = TRUE,
  cores = 4,
  continue = TRUE
)

Arguments

Host_tree

Symbiont_tree

Host_to_Symbiont_df

min_hosts

min_symbiont_tips

span_fraction

permutations

seed

verbose

Save_fp

methods

focus_hosts

subtree_features

cores

continue